publications

publications in reverse chronological order

2022

  1. iScience
  2. RECOMB-SEQ
    BOA: A Partitioned View of Genome Assembly
    Ghosh, Priyanka,  An, Xiaojing, Keppler, Patrick, Kurt, Sureyya Emre, Çatalyürek, Ümit V., Krishnamoorthy, Sriram, Sadayappan, P., Rajam, Aravind Sukumaran, and Kalyanaraman, Ananth
    Recomb-Seq 2022-12th RECOMB Satellite Workshop on Massively Parallel Sequencing (non-archival) May 2022
    PDF
  3. JEA
    On Symmetric Rectilinear Matrix Partitioning
    Yaşar, Abdurrahman, Balın, Muhammed Fatih,  An, Xiaojing, Sancak, Kaan, and Çatalyürek, Ümit V.
    Journal of Experimental Algorithmics Aug 2022
    PDF

2021

  1. HiPC
    Column-Segmented Sparse Matrix-Matrix Multiplication
    An, Xiaojing, and Çatalyürek, Ümit V.
    In HiPC21: 28th IEEE International Conference on High Performance Computing, Data, & Analytics Dec 2021
    PDF

2019

  1. HPEC
    Skip the Intersection: Quickly Counting Common Neighbors on Shared-Memory Systems
    An, Xiaojing, Gabert, Kasimir, Fox, James, Green, Oded, and Bader, David A
    In 2019 IEEE High Performance Extreme Computing Conference (HPEC) Dec 2019

2018

  1. HPEC
    Logarithmic radix binning and vectorized triangle counting
    Green, Oded, Fox, James, Watkins, Alex, Tripathy, Alok, Gabert, Kasimir, Kim, Euna,  An, Xiaojing, Aatish, Kumar, and Bader, David A
    In 2018 IEEE High Performance extreme Computing Conference (HPEC) Dec 2018
  2. HPEC
    Fast and adaptive list intersections on the gpu
    Fox, James, Green, Oded, Gabert, Kasimir,  An, Xiaojing, and Bader, David A
    In 2018 IEEE High Performance extreme Computing Conference (HPEC) Dec 2018

2015

  1. ICPP
    Optimizing image sharpening algorithm on GPU
    Fan, Mengran, Jia, Haipeng, Zhang, Yunquan,  An, Xiaojing, and Cao, Ting
    In 2015 44th International Conference on Parallel Processing Dec 2015
  2. CESS
    Optimized password recovery for encrypted RAR on GPUs
    An, Xiaojing, Jia, Haipeng, and Zhang, Yunquan
    In 2015 IEEE 17th International Conference on High Performance Computing and Communications, 2015 IEEE 7th International Symposium on Cyberspace Safety and Security, and 2015 IEEE 12th International Conference on Embedded Software and Systems Dec 2015

2014

  1. HPC China
    Research on Histogram Generation Algorithm Optimization Based on OpenCL
    An, Xiaojing, Zhang, Yunquan, and Haipeng, Jia
    In The National Annual Conference on High Performance Computing (HPC China 2014) Dec 2014